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Wednesday, February 01, 2023
10:00 AM - 11:00 AM
CNLS Conference Room (TA-3, Bldg 1690)

Seminar

Computational insights into cocrystallization prediction: from 2D models to real molecules

Yulia Pimonova
University of Utah

Recent advancements in pharmaceutical chemistry have led to the discovery of many molecules with potential therapeutic benefits. However, a significant challenge in drug development is that 90% of these molecules are poorly soluble. One of the promising solutions to this issue is using cocrystals, which are crystalline solids made up of two different compounds (target bioactive molecule + inert component).My graduate research uses a custom-developed 2D model for molecular dynamics (MD) simulations to the study the cocrystallization process in-depth. Using this scalable GPU-enabled model, we can simulate a wide range of molecular shapes and interactions. The variety of outcomes we observe, and the energetic benefits of formation correlate with the experimentally confirmed cocrystals on a qualitative level.Using large-scale simulations, we have conducted the first comprehensive investigation of cases where cocrystallization does not occur (“misses”). In contrast to the popular belief, we have found that thermodynamics alone is not predictive as 85% of cocrystals formed between poor single-component crystallizers and 27% between good ones show an energetic preference for cocrystal formation, yet no cocrystallization occurs. This discovery opens relevant questions about predictive driving factors behind cocrystallization. In my talk, I will discuss our recent advances in investigating the robustness of cocrystallization prediction techniques and what is missing in their adequate description.

Host: Kipton Barros