Selected Publications
D Shepherd, N Li, S N Micheva-Viteva, B Munsky, E Hong-Geller, J H Werner, Counting Small RNA in Pathogenic Bacteria, Analytical Chemistry, 85:10, 4938-4943 (2013)
G Neuert, B Munsky, R-Z Tan, L Teytelman, M Khammash, A van Oudenaarden, Systematic Identification of Signal-Activated Stochastic Gene Regulation, Science, 339:6119, 584-587 (2013). reprint (.pdf)
Munsky, B., Neuert, G., van Oudenaarden, A., Using Gene Expression Noise to Understand Gene Regulation, Science, 336:6078, 183-187, (2012). reprint (.pdf)
Lou, C., Stanton, B., Chen, Y-C., Munsky, B., Voigt, C. A., Ribozyme-based "insulator parts" buffer synthetic circuits from genetic context, Nature Biotechnology, 30:11, 1137-1142 (2012). reprint (.pdf)
Munsky, B., Modeling Cellular Variability, in Quantitative Biology From Molecular to Cellular Systems, pp. 234-266, M. Wall, Ed. (Taylor & Francis Group, New York, 2012). preprint (.pdf)
Bel, G., Munsky, B., Nemenman, I., Simplicity of Completion Time Distributions for Common Complex Biochemical Processes, Physical Biology, 7:016003 (2010). reprint (.pdf)
Munsky, B., Trinh, B., Khammash, M., Listening to the Noise: Random Fluctuations Reveal Gene Network Parameters, Molecular Systems Biology, 5:318 (2009). reprint (.pdf) [Journal Site]
Munsky, B., Khammash, M., The FSP Approach for the Analysis of Stochastic Noise in Gene Networks, IEEE Transactions on Automatic Control, 53, 201-214 (2008). reprint (.pdf)
Munsky, B., Khammash, M., The Finite State Projection Algorithm for the Solution of the Chemical Master Equation, Journal of Chemical Physics, 124 :044104 (2006). reprint (.pdf)
Other Recent Publications
Tapia, J., Faeder, J., Munsky, B., Adaptive Coarse-Graining for Transient and Quasi-Equilibrium Analyses of Stochastic Gene Regulation, Proc. of the 51st IEEE Conference on Decision and Control, 5361-5366, Maui, HI, Dec. 2012. reprint (.pdf)
Nemenman, I., Gnanakaran, S., Hlavacek, W., Jiang, Y., Munsky, B., Wall, M., Faeder. J. The Fifth Annual q-bio Conference on Cellular Information Processing, Physical Biology, 9:050201, 2012. reprint (.pdf)
Munsky, B., Khammash, M., Identification from stochastic cell-to-cell variation: A genetic switch case study, IET Systems Biology, 4:6, 356-366 (2010). reprint (.pdf)
Khammash, M. Munsky, B., Stochastic Gene Expression: Modeling, Analysis, and Identification, in The Control Handbook, B. Levine, Ed. (Taylor & Francis Group, New York, NY, Second Edition, 2010). preprint (.pdf)
Munsky, B., Nemenman, I. Bel, G., Specificity and Completion Time Distributions of Biochemical Processes, Journal of Chemical Physics, 131, No. 235104 (2009). reprint (.pdf)
Munsky, B., Khammash, M., Transient Analysis of Stochastic Switches and Trajectories with Applications to Gene Regulatory Networks, IET Systems Biology, 2, No. 2, 323-333 (2008).[.pdf] [IEEE Site]
Munsky, B., Khammash, M., Using Noise Transmission Properties to Identify Stochastic Gene Regulatory Networks, Proc. 46th IEEE Conference on Decision and Control, Cancun, Mexico (2008).[.pdf]
Munsky, B., Khammash, M., Computation of Switch Time Distributions in Stochastic Gene Regulatory Networks, Proc. 2008 American Control Conference, THB10.2, Seattle, WA.[.pdf]
Inglesias, P., Khammash, M., Munsky, B., Sontag, E., Del Vecchio, D., Systems Biology and Control - A Tutorial, Proc. 45th IEEE Conference on Decision and Control, New Orleans, LA (2007).
Munsky, B., Khammash, M., A Multiple Time Interval Finite State Projection Algorithm for the Solution to the Chemical Master Equation, Journal of Computational Physics, 226, 818-835 (2007).[.pdf]
Munsky, B., Khammash, M., Analysis of Noise Induced Stochastic Fluctuations in Gene Regulatory Networks , J. SICE, 5, 405-411 (2007).[.pdf]
Peles, S., Munsky, B., Khammash, M., Reduction and Solution of the Chemical Master Equation Using Time Scale Separation and Finite State Projection, Journal of Chemical Physics, 125, 204104 (2007).[.pdf]
Munsky, B., Khammash, M., A Reduced Model Solution for the Chemical Master Equation Arising in Stochastic Analyses of Biological Networks, Proc. 45th IEEE Conference on Decision and Control, San Diego, CA (2006).[.pdf]
Munsky, B., Khammash, M., The Finite State Projection Algorithm for the Solution of the Chemical Master Equation, Journal of Chemical Physics, 124 , 044104 (2006).[.pdf]
Khammash, M., Munsky, B., Systems Theory Applications in Biology: From Stochastic Chemical Kinetics to Deterministic Model Invalidation, Invited paper-European Control Conference, Kos, Greece (2007).[.pdf]
