Stieh, D., Phillips J. L., Rogers P. M., King, D. F., Cianci, G. C., Jeffs, S. A., Gnanakaran, S., and Shattock, R. J. (in press) Dynamic electrophoretic fingerprinting of the HIV-1 envelope glycoprotein. Retrovirology. [Provisional PDF]

Phillips, J. L., Colvin, M. E., and Newsam, S. (2011). Validating clustering of molecular dynamics simulations using polymer models. BMC Bioinformatics, 12 (1), 445. [PDF]

Yamada, J., Phillips, J. L., Patel, S., Goldfien, G., Calestagne-Morelli, A., Huang, H., Reza, R., Acheson, J., Krishnan, V. V., Newsam, S., Gopinathan, A., Lau, E. Y., Colvin, M. E., Uversky V. N., and Rexach M. F. (2010). A bimodal distribution of two distinct categories of instrinsically-disordered structures with separate functions in FG nucleoporins. Molecular and Cellular Proteomics, 9, 2205-2224. [PDF]

Lau, E. Y., Phillips, J. L., and Colvin, M. E. (2009). Molecular dynamics simulations of highly charged green fluorescent proteins. Molecular Physics: An International Journal at the Interface Between Chemistry and Physics, 107 (8), 1233-1241. [PDF]

Phillips, J. L., Colvin, M. E., Lau, E. Y., and Newsam, S. (2008). Analyzing dynamical simulations of intrinsically disordered proteins using spectral clustering. In IEEE BIBM 2008 Workshop on Computational Structural Bioinformatics, Philadelphia, PA. [PDF]

Tugcu, M., Wang, X., Hunter, J. E., Phillips, J., Noelle, D., and Wilkes, D. M. (2007). A computational neuroscience model of working memory with application to robot perceptual learning. In Proceedings of the 3rd International Conference on Computational Intelligence, Banff, Alberta, Canada. [PDF]

Phillips, J. L., and Noelle, D. C. (2006). Working memory for robots: inspirations from computational neuroscience. In Proceedings of the 5th International Conference on Development and Learning, Bloomington, IN. [PDF]

Phillips, J. L., and Noelle, D. C. (2005). A biologically inspired working memory framework for robots. In Proceedings of the 14th IEEE International Workshop on Robot and Human Interactive Communication, Nashville, TN. [PDF]

Phillips, J. L., and Noelle, D. C. (2005). A biologically inspired working memory framework for robots. In Proceedings of the 27th Annual Meeting of the Cognitive Science Society, Stresa, Italy.

Phillips, J. L., Kogekar, S., and Adams, J. A. (2004). Emergency automated response system (EARS). In Proceedings of the 48 Annual Meeting of the Human Factors and Ergonomics Society, New Orleans, LA. [PDF]

Phillips, J. L., and Noelle, D. C. (2004). Reinforcement learning of dimensional attention for categorization. In Proceedings of the 26th Annual Meeting of the Cognitive Science Society, Chicago, IL. [PDF]

Ph.D. Dissertation

Phillips, J. L. (2012). Validation of computational approaches for studying disordered and unfolded protein dynamics using polymer models. University of California, Merced. [PDF]

M.S. Thesis

Phillips, J. L. (2004). Reinforcement learning of dimensional attention for categorization. Vanderbilt University. [PDF]

Posters

Phillips, J. L., Lau, E. Y., Colvin, M. E., and Newsam, S. (2010). Dimensionality reduction reveals differences between disordered protein dynamics and early-stage protein folding dynamics. 24th Annual Symposium of the Protein Society, San Diego, CA.

Phillips, J. L., Lau E. Y., Rexach, M., Newsam, S., and Colvin, M. E. (2010). Differences between unfolded and disordered protein dynamics. 1st Gordon Research Conference on Intrinsically Disordered Proteins, Davidson, SC.

Phillips, J. L., Lau E. Y., Krishnan, V. V., Rexach, M., Newsam, S., and Colvin, M. E. (2010). Metric scaling for dimensionality reduction of disordered protein dynamics. 54th Annual Meeting of the Biophysical Society, San Francisco, CA. (2010 Student Research Achievement Award)

Phillips, J. L., Manilay, J. O., and Colvin, M. E. (2010). Analytic parameter fitting in stochastic stem cell models. 54th Annual Meeting of the Biophysical Society, San Francisco, CA.

Phillips, J. L., Lau E. Y., Krishnan, V. V., Rexach, M., Newsam, S., and Colvin, M. E. (2009). Dynamics analysis of unstructured FG-nucleoporins. 23nd Annual Symposium of the Protein Society, Boston, MA. (2009 Best Student Poster Award)

Phillips, J. L., Lau E. Y., Krishnan, V. V., Rexach, M., Newsam, S., and Colvin, M. E. (2008). Characterizing intrinsically disordered FG-nucleoporins using molecular dynamics. 22nd Annual Symposium of the Protein Society, San Diego, CA.