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13C-based Metabolic Flux Analysis of Environmental Microorganisms
A Mechanism for Shear Energy Dissipation in Articular Cartilage
A Single-Cell View of Multiple Antibiotic Resistance in Escherichia coli
A cell kinetics model for prostate cancer and its application to clinical data and individual patients
A single molecule view of cell fate: FISHing for worm guts
Acoustic and Inertial Flow Cytometry: Pathways to point-of-care and high-speed parallel cellular diagnostics
Adapting stochastic simulation to suit biology and biological data to suit simulation
Agent-based modeling workshop
An Engineer's View of the Cell
Artificial Nanopores that Mimic the Transport Selectivity of the Nuclear Pore Complex
Biology by design: reduction and synthesis of cellular networks
Biophysics of anthrax toxin inhibition by derivatives of beta-cyclodextrin
CNLS q-bio Seminars
Cellular Network Based Identification of Master Regulators of Physiological and Oncogenic Processes
Characterization of the Complexity of Signaling Complexes in Human T Cells
Computational Modeling of Interactions in Dynamic Biological Networks
Computer-Aided Drug Repurposing
Conformation relaxation dynamics of biomolecules
Contact Us
Cooperation and cheating in microbes
Cooperation and reversibility in microbial evolution
Coordinate regulation of virulence in Salmonella typhimurium
Cracking the Neural Code
Defending against anthrax: Cell membrane channels and drug design
Defending from anthrax: Cell membrane channels and drug design
Development of Methods to Combine Sequence, Structure, and Network Analyses to Study Gene Annotation, Coevolution, and Allostery in Protein:RNA Complexes
Diffusion in living cells: simple or anomalous?
Discovering the role of Protein Dynamics in RNA recognition motifs
Discrete Stochastic Simulation of Spatially Inhomogeneous Biochemical Systems
Dynamic disorder in single enzyme kinetics: effects of conformational fluctuations
Dynamical Networks in Translation: From Molecules to Cells
Dynamical signature of the core promoter
EGF receptor in the lime light
Escherichia coli Cultures in Temperature Gradients
Exploring mechanisms of oscillations in p53 and NF-κB systems
Expression and Function of Antibody Fc Receptors on Human Airway Smooth Muscle Cells
Feedback Control with Bio-molecular Circuits
Feedback and Control in Biological Circuit Design
From Robots to Molecules: Intelligent Motion Planning and Analysis with Probabilistic Roadmaps
Future Seminars
Genetic circuit architectures underlying cell-fate choices for immunity
Genome-scale analysis of protein-protein interaction networks
HIV Vaccines
How liquid is biological signaling? - using random graphs to study protein networks
How proteins acquired their tricks: Physical basis of protein structure and function
How the sea urchin embryo gets its cleavage furrows (in the right place)
Implications of Rewiring Bacterial Quorum Sensing
Journey through the cell
Kinetics of peptide folding in dehydrated and crowded environments
Learning design principles from noisy small gene regulatory networks
Learning mechanistic models of gene expression regulation from natural sequence variation
Learning signaling pathway structure from high throughput, multivariate single cell data
Lecture
Main Page
Mechanical roles of the bacterial cytoskeleton
Model Reduction of Rule-based ODE Models: Exact vs. Approximate Approach
Modeling dynamic molecular compartments: the bigraphical approach
Modeling hepatitis C virus (HCV) dynamics: Relating intracellular (in vitro) and extracellular (in vivo) HCV kinetics under treatment
Modelling of the Mitotic Spindle Assembly Checkpoint using SimBiology
Multiparameter Computational Modeling of Tumor Invasion
Nano-world of wound and heart healing
Nanomedicine and chemical imaging approaches for traumatic spinal cord injury
Nanoscience workshop
Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods
Neutralizing antibody responses in HIV-1 and nonpathogenic SIV infection
Noisy out of necessity: the relationship among gene circuit architecture, dynamics and biological function
On the origin of symmetry in biology: Protein oligomers
On two problems in medicine - a view from a crossroad of disciplines
Origin of the Domestic Dog
PROTEIN CONFORMATIONAL AND INTERACTION DYNAMICS BY MOLECULAR DYNAMICS SIMULATIONS AND NUCLEAR MAGNETIC RESONANCE EXPERIMENTS
Past Lectures
Past Seminars
Programming Cells
Programming Cells: Using a Synthetic Light Sensor as a Fast, High-Resolution Input to Signaling Networks
Programming RNA Devices to Control Cellular Information Processing
Protein Conformational and Interaction Dynamics by Molecular Dynamics Simulations and Nuclear Magnetic Resonance Experiments
Protein tagging and labeling systems for protein chemistry and cellular biology.
Proteins Behaving Badly: Misfolding and Alzheimer's Disease
Proteomic analysis on a MALDI-MS platform
Public Lectures
Quantitative Analysis of Constructive Stochastic Designs in Biological Systems
Robust multicellular computing using genetically-encoded NOR gates and chemical “wires”
Robustness in Nature: Challenges and Opportunities for the Systems Biology Community
Rule-Based Computational Modeling of Modular Signaling Protein Interactions
Selectivity of transport through the nuclear pore complex: from nuclear import to bio-sensors
Sensory estimation of ligand concentrations by a single receptor and a receptor array
Simple Models for Biomembrane Structure and Dynamics
Simple mathematical models to understand influenza’s complex evolutionary dynamics
Single-molecule meets scaling: the low-force elasticity of single-stranded DNA
Single Molecule Fluorescence Studies of Nucleocytoplasmic Transport
Single molecule study of disassembly of SNARE complex by NSF/α−SNAP
Single molecule study on the disassembly reaction of snare complex
Specificity and satisfiability in biological information processing networks
Stochastic Biological Circuits: Noise as a Phenotype
Structural and cellular dynamics in vascular development
Study of protein-RNA interactions by using fluorescence resonance energy transfer (FRET) and single-molecule FRET (smFRET)
TAM receptor regulation of the innate immune response
The Art and Science of Systems Biology
The Energetics and Mechanistic Roles of Protein Conformational Dynamics
The Flagellar Length Control System
The Joint BioEnergy Institute
The Martini force field: Different flavors for molecular simulations
The Possibility of Automated Experiments for Inference of Metabolic Models
The q-bio Public Lecture Series
The thermal response and motor behavior of E. coli and C. elegans
Theoretical and Experimental Analysis of Chemotactic Systems in Biology
Theory of microtubule depolymerization by kinesin-8 motors
Tracking single quantum dots in three dimensions: Following cell receptor traffic and membrane topology
Understanding adaptive immunity: a crossroad of the physical and life sciences
Unraveling a pandemic: from avian to swine influenza
Vaccine Design for Influenza and Dengue Fever
Variability in HIV Vaccine Design
Wiring The Brain
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